Genetic variation in an individual human exome

by Ng P.C., Levy S., Huang J., Stockwell T.B., Walenz B.P., Li K., Axelrod N., Busam D.A., Strausberg R.L., Venter J.C.
Published 2019

Deep sequencing of influenza A virus from a human challenge study reveals a selective bottleneck and only limited intrahost genetic diversification

by Leonard, A.S, McClain, M.T, Smith, G.J.D, Wentworth, D.E, Halpin, R.A, Lin, X, Ransier, A, Stockwell, T.B, Das, S.R, Gilbert, A.S, Lambkin-Williams, R, Ginsburg, G.S, Woods, C.W, Koelle, K
Published 2020

The contrasting phylodynamics of human inuenza B viruses

by Vijaykrishna, Dhanasekaran, Holmes E.C., Joseph U., Fourment M., Su, Yvonne Chuan Fang, Halpin R., Lee R.T.C., Deng Y.-M., Gunalan V., Lin X., Stockwell T.B., Fedorova N.B., Zhou B., Spirason N., Kuuhnert D., Boskova V., Stadler T., Costa
Published 2016

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

by Bahl, J., Nelson, M.I., Chan, K.H., Chen, R., Vijaykrishna, D., Halpin, R.A., Stockwell, T.B., Lin, X., Wentworth, D.E., Ghedin, E., Guan, Y., Peiris, J.S.M., Riley, S., Rambaut, A., Holmes, E.C., Smith, G.J.D.
Published 2016

The effective rate of influenza reassortment is limited during human infection

by Sobel Leonard A., McClain M.T., Smith G.J.D., Wentworth D.E., Halpin R.A., Lin X., Ransier A., Stockwell T.B., Das S.R., Gilbert A.S., Lambkin-Williams R., Ginsburg G.S., Woods C.W., Koelle K., Illingworth C.J.R.
Published 2019

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential

by Bahl J., Pham T.T., Hill N.J., Hussein I.T.M., Ma E.J., Easterday B.C., Halpin R.A., Stockwell T.B., Wentworth D.E., Kayali G., Krauss S., Schultz-Cherry S., Webster R.G., Webby R.J., Swartz M.D., Smith G.J.D., Runstadler J.A.
Published 2019

Influenza A Virus Migration and Persistence in North American Wild Birds

by Bahl, J., Krauss, S., Kühnert, D., Fourment, M., Raven, G., Pryor, S.P., Niles, L.J., Danner, A., Walker, D., Mendenhall, I.H., Su, Y.C.F., Dugan, V.G., Halpin, R.A., Stockwell, T.B., Webby, R.J., Wentworth, D.E., Drummond, A.J., Smith, G.J.D., Webster, R.G.
Published 2016

Influenza A virus evolution and spatio-temporal dynamics in eurasian wild birds: A phylogenetic and phylogeographical study of whole-genome sequence data

by Lewis, N.S, Verhagen, J.H, Javakhishvili, Z, Russell, C.A, Lexmond, P, Westgeest, K.B, Bestebroer, T.M, Halpin, R.A, Lin, X, Ransier, A, Fedorova, N.B, Stockwell, T.B, Latorre-Margalef, N, Olsen, B, Smith, G, Bahl, J, Wentworth, D.E, Waldenström, J, Fouchier, R.A.M, de Graaf, M
Published 2020

The contrasting phylodynamics of human influenza B viruses

by Spirason, Natalie, Lin, Xudong, Stockwell, Timothy B, Fedorova, Nadia B, Zhou, Bin, Vijaykrishna, Dhanasekaran, Holmes, Edward C, Joseph, Udayan, Fourment, Mathieu, Su, Yvonne CF, Halpin, Rebecca, Lee, Raphael TC, Deng, Yi-Mo, Gunalan, Vithiagaran, Kühnert, Denise, Bošková, Veronika, Stadler, Tanja, Costa, Anna-Maria, Dwyer, Dominic E, Huang, Q Sue, Jennings, Lance C, Rawlinson, William, Sullivan, Sheena G, Hurt, Aeron C, Maurer-Stroh, Sebastian, Wentworth, David E, Smith, Gavin JD, Barr, Ian G
Published 2015

The diploid genome sequence of an individual human

by Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P., Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Pang A.W.C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V., Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A., Abril J.F., Gill J., Borman J., Rogers Y.-H., Frazier M.E., Scherer S.W., Strausberg R.L., Venter J.C.
Published 2019