Pooled sequencing and rare variant association tests for identifying the determinants of emerging drug resistance in malaria parasites

by Ian H. Cheeseman, Marina McDew-White, Aung Pyae Phyo, Kanlaya Sriprawat, Francois Nosten, Timothy J.C. Anderson
Published 2018

Close kinship within multiple-genotype malaria parasite infections

by Standwell C. Nkhoma, Shalini Nair, Ian H. Cheeseman, Cherise Rohr-Allegrini, Sittaporn Singlam, François Nosten, Tim J.C. Anderson
Published 2018

Single-genome sequencing reveals within-host evolution of human malaria parasites

by Aliou Dia, Catherine Jett, Simon G. Trevino, Cindy S. Chu, Kanlaya Sriprawat, Timothy J.C. Anderson, François Nosten, Ian H. Cheeseman
Published 2022

High-Resolution Single-Cell Sequencing of Malaria Parasites

by Simon G. Trevino, Standwell C. Nkhoma, Shalini Nair, Benjamin J. Daniel, Karla Moncada, Stanley Khoswe, Rachel L. Banda, François Nosten, Ian H. Cheeseman
Published 2018

Single-cell genomics for dissection of complex malaria infections

by Shalini Nair, Standwell C. Nkhoma, David Serre, Peter A. Zimmerman, Karla Gorena, Benjamin J. Daniel, Francxois Nosten, Timothy J.C. Anderson, Ian H. Cheeseman
Published 2018

Population parameters underlying an ongoing soft sweep in southeast asian malaria parasites

by Timothy J.C. Anderson, Shalini Nair, Marina McDew-White, Ian H. Cheeseman, Standwell Nkhoma, Fatma Bilgic, Rose McGready, Elizabeth Ashley, Aung Pyae Phyo, Nicholas J. White, Francois Nosten
Published 2018

Pairwise growth competitions identify relative fitness relationships among artemisinin resistant Plasmodium falciparum field isolates

by Abigail R. Tirrell, Katelyn M. Vendrely, Lisa A. Checkley, Sage Z. Davis, Marina McDew-White, Ian H. Cheeseman, Ashley M. Vaughan, François H. Nosten, Timothy J.C. Anderson, Michael T. Ferdig
Published 2020

Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

by Xue Li, Sudhir Kumar, Marina McDew-White, Meseret Haile, Ian H. Cheeseman, Scott Emrich, Katie Button-Simons, François Nosten, Stefan H.I. Kappe, Michael T. Ferdig, Tim J.C. Anderson, Ashley M. Vaughan
Published 2020

Plasmodium falciparum genetic crosses in a humanized mouse model

by Ashley M. Vaughan, Richard S. Pinapati, Ian H. Cheeseman, Nelly Camargo, Matthew Fishbaugher, Lisa A. Checkley, Shalini Nair, Carolyn A. Hutyra, François H. Nosten, Timothy J.C. Anderson, Michael T. Ferdig, Stefan H.I. Kappe
Published 2018

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance

by Gustavo C. Cerqueira, Ian H. Cheeseman, Steve F. Schaffner, Shalini Nair, Marina McDew-White, Aung Pyae Phyo, Elizabeth A. Ashley, Alexandre Melnikov, Peter Rogov, Bruce W. Birren, François Nosten, Timothy J.C. Anderson, Daniel E. Neafsey
Published 2018

Population structure shapes copy number variation in malaria parasites

by Ian H. Cheeseman, Becky Miller, John C. Tan, Asako Tan, Shalini Nair, Standwell C. Nkhoma, Marcos De Donato, Hectorina Rodulfo, Arjen Dondorp, Oralee H. Branch, Lastenia Ruiz Mesia, Paul Newton, Mayfong Mayxay, Alfred Amambua-Ngwa, David J. Conway, François Nosten, Michael T. Ferdig, Tim J.C. Anderson
Published 2018

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice

by Katrina A. Button-Simons, Sudhir Kumar, Nelly Carmago, Meseret T. Haile, Catherine Jett, Lisa A. Checkley, Spencer Y. Kennedy, Richard S. Pinapati, Douglas A. Shoue, Marina McDew-White, Xue Li, François H. Nosten, Stefan H. Kappe, Timothy J.C. Anderson, Jeanne Romero-Severson, Michael T. Ferdig, Scott J. Emrich, Ashley M. Vaughan, Ian H. Cheeseman
Published 2022

Optimizing bulk segregant analysis of drug resistance using Plasmodium falciparum genetic crosses conducted in humanized mice

by Katelyn Vendrely Brenneman, Xue Li, Sudhir Kumar, Elizabeth Delgado, Lisa A. Checkley, Douglas A. Shoue, Ann Reyes, Biley A. Abatiyow, Meseret T. Haile, Rupam Tripura, Tom Peto, Dysoley Lek, Katrina A. Button-Simons, Stefan H.I. Kappe, Mehul Dhorda, François Nosten, Standwell C. Nkhoma, Ian H. Cheeseman, Ashley M. Vaughan, Michael T. Ferdig, Tim J.C. Anderson
Published 2022

A Malaria Parasite Cross Reveals Genetic Determinants of Plasmodium falciparum Growth in Different Culture Media

by Sudhir Kumar, Xue Li, Marina McDew-White, Ann Reyes, Elizabeth Delgado, Abeer Sayeed, Meseret T. Haile, Biley A. Abatiyow, Spencer Y. Kennedy, Nelly Camargo, Lisa A. Checkley, Katelyn V. Brenneman, Katrina A. Button-Simons, Manoj T. Duraisingh, Ian H. Cheeseman, Stefan H.I. Kappe, François Nosten, Michael T. Ferdig, Ashley M. Vaughan, Tim J.C. Anderson
Published 2022

A major genome region underlying artemisinin resistance in malaria

by Ian H. Cheeseman, Becky A. Miller, Shalini Nair, Standwell Nkhoma, Asako Tan, John C. Tan, Salma Al Saai, Aung Pyae Phyo, Carit Ler Moo, Khin Maung Lwin, Rose McGready, Elizabeth Ashley, Mallika Imwong, Kasia Stepniewska, Poravuth Yi, Arjen M. Dondorp, Mayfong Mayxay, Paul N. Newton, Nicholas J. White, François Nosten, Michael T. Ferdig, Timothy J.C. Anderson
Published 2018