TUGDA: Task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings

by Peres Da Silva, R., Suphavilai, Chayaporn, Nagarajan, Niranjan
Published 2022

Short-chain fatty acids of various lengths differentially inhibit <i>Klebsiella pneumoniae</i> and <i>Enterobacteriaceae</i> species

by Chang, Kai Chirng, Nagarajan, Niranjan, Gan, Yunn-Hwen
Published 2024

CalmBelt: Rapid SARS-CoV-2 Genome Characterization for Outbreak Tracking

by Yingtaweesittikul, Hatairat, Ko, Karrie, Abdul Rahman, Nurdyana, Tan, Shireen Yan Ling, Nagarajan, Niranjan, Suphavilai, Chayaporn
Published 2022

Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn's disease

by Hu, Shijia, Png, Eileen, Gowans, Michelle, Ong, David EH, de Sessions, Paola Florez, Song, Jie, Nagarajan, Niranjan
Published 2022

Development and application of a transcriptional sensor for detection of heterologous acrylic acid production in E. coli

by Raghavan, Sarada S., Chee, Sharon, Li, Juntao, Poschmann, Jeremie, Nagarajan, Niranjan, Wei, Siau Jia, Verma, Chandra Shekhar, Ghadessy, Farid John
Published 2020

Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures

by Suphavilai, Chayaporn, Chia, Shumei, Sharma, Ankur, Tu, Lorna, Da Silva, Rafael Peres, Mongia, Aanchal, DasGupta, Ramanuj, Nagarajan, Niranjan
Published 2022

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data

by Li, Chenhao A., Av-Shalom, Tamar, Tan, Jun Wei Gerald A., Kwah, Junmei Samantha, Chng, Kern Rei A., Nagarajan, Niranjan
Published 2022

Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners

by Molton, James S., Lee, I. Russel, Bertrand, Denis, Ding, Ying, Kalimuddin, Shirin, Lye, David C., Nagarajan, Niranjan, Gan, Yunn-Hwen, Archuleta, Sophia
Published 2021

Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners

by Molton, James S., Lee, I. Russel, Bertrand, Denis, Ding, Ying, Kalimuddin, Shirin, Lye, David C., Nagarajan, Niranjan, Gan, Yunn-Hwen, Archuleta, Sophia
Published 2022

Gut microbiome responses to dietary intervention with hypocholesterolemic vegetable oils

by Lim, Rachel Rui Xia, Park, Mi Ae, Wong, Long Hui, Haldar, Sumanto, Lim, Kevin Junliang, Nagarajan, Niranjan, Henry, Christiani Jeyakumar, Jiang, Yuan Rong, Moskvin, Oleg Vladimirovich
Published 2022

Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

by Gounot, Jean-Sebastien, Chia, Minghao, Bertrand, Denis, Saw, Woei-Yuh, Ravikrishnan, Aarthi, Low, Adrian, Ding, Yichen, Amanda, Ng Hui Qi, Tan, Linda Wei Lin, Teo, Yik-Ying, Seedorf, Henning, Nagarajan, Niranjan
Published 2024

Mutual Exclusion of <i>Methanobrevibacter</i> Species in the Human Gut Microbiota Facilitates Directed Cultivation of a <i>Candidatus</i> Methanobrevibacter Intestini Representativ...

by Low, Adrian, Lee, Jolie Kar Yi, Gounot, Jean-Sebastien, Ravikrishnan, Aarthi, Ding, Yichen, Saw, Woei-Yuh, Tan, Linda Wei Lin, Moong, Don Kyin Nwe, Teo, Yik Ying, Nagarajan, Niranjan, Seedorf, Henning
Published 2024

Duration of carbapenemase-producing enterobacteriaceae carriage in hospital patients

by Mo, Yin, Hernandez-Koutoucheva, Anastasia, Musicha, Patrick, Bertrand, Denis, Lye, David C., Ng, Oon Tek, Fenlon, Shannon N., Chen, Swaine L., Ling, Moi Lin, Tang, Wen Ying, Barkham, Timothy, Nagarajan, Niranjan, Cooper, Ben S., Marimuthu, Kalisvar
Published 2021

Dominant CarbapenemaseEncoding Plasmids in Clinical Enterobacterales Isolates and Hypervirulent Klebsiella pneumoniae, Singapore

by Yong, Melvin, Chen, Yahua, Oo, Guodong, Chang, Kai Chirng, Chu, Wilson HW, Teo, Jeanette, Venkatachalam, Indumathi, Thevasagayam, Natascha May, Sridatta, Prakki S Rama, Koh, Vanessa, Marcoleta, Andres E, Chen, Hanrong, Nagarajan, Niranjan, Kalisvar, Marimuthu, Ng, Oon Tek, Gan, Yunn-Hwen
Published 2023

The liver-gut microbiota axis modulates hepatotoxicity of tacrine in the rat

by Yip, Lian Yee, Aw, Chiu Cheong, Lee, Sze Han, Hong, Yi Shuen, Ku, Han Chen, Xu, Winston Hecheng, Chan, Jessalyn Mei Xuan, Cheong, Eleanor Jing Yi, Chng, Kern Rei, Ng, Amanda Hui Qi, Nagarajan, Niranjan, Mahendran, Ratha, Lee, Yuan Kun, Browne, Edward R, Chan, Eric Chun Yong
Published 2020

Profiling microbial communities in idiopathic granulomatous mastitis

by Ong, Seeu Si, Xu, Jia, Sim, Choon Kiat, Khng, Alexis Jiaying, Ho, Peh Joo, Kwan, Philip Kam Weng, Ravikrishnan, Aarthi, Tan, Benita Kiat-Tee, Tan, Qing Ting, Tan, Ern Yu, Tan, Su-Ming, Putti, Thomas Choudary, Lim, Swee Ho, Tang, Serene Ee Ling, Nagarajan, Niranjan, Karnani, Neerja, Li, Jingmei, Hartman, Mikael
Published 2023

Profiling Microbial Communities in Idiopathic Granulomatous Mastitis

by Ong, Seeu Si, Xu, Jia, Sim, Choon Kiat, Khng, Alexis Jiaying, Ho, Peh Joo, Kwan, Philip Kam Weng, Ravikrishnan, Aarthi, Tan, Kiat-Tee Benita, Tan, Qing Ting, Tan, Ern Yu, Tan, Su-Ming, Putti, Thomas Choudary, Lim, Swee Ho, Tang, Ee Ling Serene, Nagarajan, Niranjan, Karnani, Neerja, Li, Jingmei, Hartman, Mikael
Published 2023

COVID-19 drug practices risk antimicrobial resistance evolution

by Afshinnekoo, Ebrahim, Bhattacharya, Chandrima, Burguete-García, A., Castro-Nallar, Eduardo, Deng, Youping, Desnues, Christelle, Dias-Neto, Emmanuel, Elhaik, Eran, Iraola, Gregorio, Jang, Soojin, Łabaj, P.P., Mason, Christopher E., Nagarajan, Niranjan, Poulsen, Michael, Prithiviraj, Bharath, Siam, Rania, Shi, Tieliu, Suzuki, Haruo, Werner, Johannes, Mercedes Zambrano, Maria, Bhattacharyya, Malay, MetaSUB Consortium.
Published 2022

Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin

by Wu, Guangxi, Zhao, He, Rajapakse, Menaka Priyadarsani, Wong, Wing Cheong, Xu, Jun, Saunders, Charles W., Reeder, Nancy L., Reilman, Raymond A., Scheynius, Annika, Sun, Sheng, Billmyre, Blake Robert, Li, Wenjun, Averette, Anna Floyd, Mieczkowski, Piotr, Heitman, Joseph, Theelen, Bart, Schröder, Markus S., De Sessions, Paola Florez, Butler, Geraldine, Maurer-Stroh, Sebastian, Boekhout, Teun, Nagarajan, Niranjan, Dawson, Thomas L., Li, Chenhao
Published 2016

Immunological corollary of the pulmonary mycobiome in bronchiectasis : the CAMEB study

by Mac Aogáin, Micheál, Chandrasekaran, Ravishankar, Lim, Albert Yick Hou, Low, Teck Boon, Tan, Gan Liang, Hassan, Tidi, Ong, Thun How, Bertrand, Denis, Koh, Jia Yu, Lee, Zi Yang, Gwee, Xiao Wei, Martinus, Christopher, Matta, Sri Anusha, Chew, Fook Tim, Keir, Holly R., Abisheganaden, John Arputhan, Koh, Mariko Siyue, Nagarajan, Niranjan, Chalmers, James D., Ng, Amanda Hui Qi, Pang, Sze Lei, Sio, Yang Yie, Connolly, John E., Chotirmall, Sanjay Haresh
Published 2019