Multiple displacement amplification for malaria parasite DNA

by Y. Wang, S. Nair, F. Nosten, T. J C Anderson
Published 2018

A major genome region underlying artemisinin resistance in malaria

by Ian H. Cheeseman, Becky A. Miller, Shalini Nair, Standwell Nkhoma, Asako Tan, John C. Tan, Salma Al Saai, Aung Pyae Phyo, Carit Ler Moo, Khin Maung Lwin, Rose McGready, Elizabeth Ashley, Mallika Imwong, Kasia Stepniewska, Poravuth Yi, Arjen M. Dondorp, Mayfong Mayxay, Paul N. Newton, Nicholas J. White, François Nosten, Michael T. Ferdig, Timothy J.C. Anderson
Published 2018

Single-cell genomics for dissection of complex malaria infections

by Shalini Nair, Standwell C. Nkhoma, David Serre, Peter A. Zimmerman, Karla Gorena, Benjamin J. Daniel, Francxois Nosten, Timothy J.C. Anderson, Ian H. Cheeseman
Published 2018

Recurrent gene amplification and soft selective sweeps during evolution of multidrug resistance in malaria parasites

by Shalini Nair, Denae Nash, Daniel Sudimack, Anchalee Jaidee, Marion Barends, Anne Catrin Uhlemann, Sanjeev Krishna, François Nosten, Tim J.C. Anderson
Published 2018

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice

by Katrina A. Button-Simons, Sudhir Kumar, Nelly Carmago, Meseret T. Haile, Catherine Jett, Lisa A. Checkley, Spencer Y. Kennedy, Richard S. Pinapati, Douglas A. Shoue, Marina McDew-White, Xue Li, François H. Nosten, Stefan H. Kappe, Timothy J.C. Anderson, Jeanne Romero-Severson, Michael T. Ferdig, Scott J. Emrich, Ashley M. Vaughan, Ian H. Cheeseman
Published 2022

Rapid genotyping of loci involved in antifolate drug resistance in Plasmodium falciparum by primer extension

by Shalini Nair, Alan Brockman, Lucy Paiphun, François Nosten, Tim J C Anderson
Published 2018

Selection strength and hitchhiking around two anti-malarial resistance genes

by Denae Nash, Shalini Nair, Mayfong Mayxay, Paul N. Newton, Jean Paul Guthmann, François Nosten, Tim J.C. Anderson
Published 2018

Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites

by Tim J.C. Anderson, Shalini Nair, Dan Sudimack, Jeff T. Williams, Mayfong Mayxay, Paul N. Newton, Jean Paul Guthmann, Frank M. Smithuis, Tran Tinh Hien, Ingrid V.F. Van Den Broek, Nicholas J. White, François Nosten
Published 2018

Genetic changes during laboratory propagation: Copy number At the reticulocyte-binding protein 1 locus of Plasmodium falciparum

by Shalini Nair, Standwell Nkhoma, François Nosten, Mayfong Mayxay, Neil French, Jim Whitworth, Tim Anderson
Published 2018

Population structure shapes copy number variation in malaria parasites

by Ian H. Cheeseman, Becky Miller, John C. Tan, Asako Tan, Shalini Nair, Standwell C. Nkhoma, Marcos De Donato, Hectorina Rodulfo, Arjen Dondorp, Oralee H. Branch, Lastenia Ruiz Mesia, Paul Newton, Mayfong Mayxay, Alfred Amambua-Ngwa, David J. Conway, François Nosten, Michael T. Ferdig, Tim J.C. Anderson
Published 2018

Pooled sequencing and rare variant association tests for identifying the determinants of emerging drug resistance in malaria parasites

by Ian H. Cheeseman, Marina McDew-White, Aung Pyae Phyo, Kanlaya Sriprawat, Francois Nosten, Timothy J.C. Anderson
Published 2018

High heritability of malaria parasite clearance rate indicates a genetic basis for artemisinin resistance in western Cambodia

by Tim J C Anderson, Shalini Nair, Standwell Nkhorna, Jeff T. Williams, Mallika Imwong, Poravuth Yi, Duong Socheat, Debashish Das, Kesinee Chotivanich, Nicholas P J Day, Nicholas J. White, Arjen M. Dondorp
Published 2018

Adaptive copy number evolution in malaria parasites

by Shalini Nair, Becky Miller, Marion Barends, Anchalee Jaidee, Jigar Patel, Mayfong Mayxay, Paul Newton, François Nosten, Michael T. Ferdig, Tim J.C. Anderson
Published 2018

Inferred relatedness and heritability in malaria parasites

by Tim J.C. Anderson, Jeff T. Williams, Shalini Nair, Daniel Sudimack, Marion Barends, Anchalee Jaidee, Ric N. Price, François Nosten
Published 2018

Genetic evaluation of the performance of malaria parasite clearance rate metrics

by Standwell C. Nkhoma, Kasia Stepniewska, Shalini Nair, Aung Pyae Phyo, Rose McGready, François Nosten, Tim J.C. Anderson
Published 2018

High-Resolution Single-Cell Sequencing of Malaria Parasites

by Simon G. Trevino, Standwell C. Nkhoma, Shalini Nair, Benjamin J. Daniel, Karla Moncada, Stanley Khoswe, Rachel L. Banda, François Nosten, Ian H. Cheeseman
Published 2018

Pairwise growth competitions identify relative fitness relationships among artemisinin resistant Plasmodium falciparum field isolates

by Abigail R. Tirrell, Katelyn M. Vendrely, Lisa A. Checkley, Sage Z. Davis, Marina McDew-White, Ian H. Cheeseman, Ashley M. Vaughan, François H. Nosten, Timothy J.C. Anderson, Michael T. Ferdig
Published 2020

Close kinship within multiple-genotype malaria parasite infections

by Standwell C. Nkhoma, Shalini Nair, Ian H. Cheeseman, Cherise Rohr-Allegrini, Sittaporn Singlam, François Nosten, Tim J.C. Anderson
Published 2018

Are transporter genes other than the chloroquine resistance locus (pfcrt) and multidrug resistance gene (pfmdr) associated with antimalarial drug resistance?

by Timothy J C Anderson, Shalini Nair, Huang Qin, Sittaporn Singlam, Alan Brockman, Lucy Paiphun, François Nosten
Published 2018

Population parameters underlying an ongoing soft sweep in southeast asian malaria parasites

by Timothy J.C. Anderson, Shalini Nair, Marina McDew-White, Ian H. Cheeseman, Standwell Nkhoma, Fatma Bilgic, Rose McGready, Elizabeth Ashley, Aung Pyae Phyo, Nicholas J. White, Francois Nosten
Published 2018